top of page
shade lab
understanding microbiome resilience
The purpose of the ShadeLab Findability Crusade is to ensure that all raw data (with metadata), publications/preprints, and analysis code are linked to each other and mutually findable,
no matter which is discovered first.
See our GitHub readme files for examples of how we link code to papers to data!
Code
Our code is on GitHub
The GitHub Readme includes:
-
Citation and link to paper/preprint
-
DOI
-
Study abstract
-
Link to raw data
-
Link to funding, if applicable



Data
Our raw sequencing data is in the NCBI SRA or the JGI Genome Portal/IMG
Data are available when we submit a preprint or a manuscript for review
This is the hard part! Data repositories are to include:
-
Final DOI of published piece and full citation
-
Metadata



Paper
Publications and preprints are open access
Papers/preprints include
-
Link to GitHub repo
-
Link to raw data
-
Info is updated when preprints are accepted for publication



bottom of page